vgを完全に理解する Advent Calendar 2019 - Adventar

ゲノムグラフのエコシステムを支えるコマンドラインツールである vg の使い方を紹介するアドベントカレンダーです。
タイトルの通り、vg v1.20.0 (2019年11月現在の最新バージョン) を完全に理解する(=チュートリアルを完了する)ことを目標にします。

記事を管理しているリポジトリ

SUN	MON	TUE	WED	THU	FRI	SAT
1 hanzou666	2 hanzou666	3 hanzou666	4 hanzou666	5 hanzou666	6 hanzou666	7 hanzou666
8 hanzou666	9 hanzou666	10 hanzou666	11 hanzou666	12 hanzou666	13 hanzou666	14 hanzou666
15 M	16 hanzou666	17 hanzou666	18 hanzou666	19 M	20 M	21 hanzou666
22 M	23 hanzou666	24 hanzou666	25 hanzou666

12/1

hanzou666

イントロ

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-01.md

vg-advent-calendar-2019/12-01.md at master · genomegraph/vg-advent-calendar-2019 · GitHub
12/2

hanzou666

vgのファイルフォーマット1

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-02.md

vg-advent-calendar-2019/12-02.md at master · genomegraph/vg-advent-calendar-2019 · GitHub
12/3

hanzou666

vgのファイルフォーマット2

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-03.md

vg-advent-calendar-2019/12-03.md at master · genomegraph/vg-advent-calendar-2019 · GitHub
12/4

hanzou666

vg construct

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-04.md

vg-advent-calendar-2019/12-04.md at master · genomegraph/vg-advent-calendar-2019 · GitHub
12/5

hanzou666

vg index

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-05.md
12/6

hanzou666

vg map

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-06.md
12/7

hanzou666

vg augment

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-07.md
12/8

hanzou666

vg pack

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-08.md
12/9

hanzou666

vg call

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-09.md
12/10

hanzou666

vg deconstruct

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-10.md
12/11

hanzou666

vg find

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-11.md
12/12

hanzou666

vg ids

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-12.md
12/13

hanzou666

vg mod

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-13.md
12/14

hanzou666

vg prune

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-14.md
12/15

M

vg sim

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-15.md

vg-advent-calendar-2019/12-15.md at master · genomegraph/vg-advent-calendar-2019 · GitHub
12/16

hanzou666

vg snarls

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-16.md

vg-advent-calendar-2019/12-16.md at master · genomegraph/vg-advent-calendar-2019 · GitHub
12/17

hanzou666

vg stats

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-17.md
12/18

hanzou666

vg view

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-18.md
12/19

M

vg annotate

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-19.md
12/20

M

可視化

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-20.md

vg-advent-calendar-2019/12-20.md at master · genomegraph/vg-advent-calendar-2019 · GitHub
12/21

hanzou666

vg explode

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-21.md

vg-advent-calendar-2019/12-21.md at master · genomegraph/vg-advent-calendar-2019 · GitHub
12/22

M

vg inject

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-22.md

vg-advent-calendar-2019/12-22.md at master · genomegraph/vg-advent-calendar-2019 · GitHub
12/23

hanzou666

vg msga

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-23.md

vg-advent-calendar-2019/12-23.md at master · genomegraph/vg-advent-calendar-2019 · GitHub
12/24

hanzou666

vg circularize/surject

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-24.md

vg-advent-calendar-2019/12-24.md at master · genomegraph/vg-advent-calendar-2019 · GitHub
12/25

hanzou666

役に立ちそうなことをいう

https://github.com/genomegraph/vg-advent-calendar-2019/blob/master/12-25.md

vg-advent-calendar-2019/12-25.md at master · genomegraph/vg-advent-calendar-2019 · GitHub